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BugMat and FindNeighbour: command line and server applications for investigating bacterial relatedness.

Abstract:

Background

Large scale bacterial sequencing has made the determination of genetic relationships within large sequence collections of bacterial genomes derived from the same microbial species an increasingly common task. Solutions to the problem have application to public health (for example, in the detection of possible disease transmission), and as part of divide-and-conquer strategies selecting groups of similar isolates for computationally intensive methods of phylogenetic inf...

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Publication status:
Published
Peer review status:
Peer reviewed

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Publisher copy:
10.1186/s12859-017-1907-2

Authors


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Institution:
University of Oxford
Division:
MPLS Division
Department:
Computer Science
Role:
Author
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Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDM, NDM Experimental Medicine
Role:
Author
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Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDM; NDM Experimental Medicine; Biomedical Research Centre
Role:
Author
More by this author
Institution:
University of Oxford
Division:
Medical Sciences Division
Department:
NDM; NDM Experimental Medicine
Role:
Author
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Wellcome Trust More from this funder
Publisher:
BioMed Central Publisher's website
Journal:
BMC Bioinformatics Journal website
Volume:
18
Issue:
1
Pages:
477
Publication date:
2017-11-01
Acceptance date:
2017-11-01
DOI:
EISSN:
1471-2105
ISSN:
1471-2105
Pmid:
29132318
Source identifiers:
745968
Language:
English
Keywords:
Pubs id:
pubs:745968
UUID:
uuid:f1e0ee63-e446-423b-b67e-7fd1ad340c9e
Local pid:
pubs:745968
Deposit date:
2017-12-19

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