Journal article
High precision Neisseria gonorrhoeae variant and antimicrobial resistance calling from metagenomic Nanopore sequencing
- Abstract:
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The rise of antimicrobial-resistant Neisseria gonorrhoeae is a significant public health concern. Against this background, rapid culture-independent diagnostics may allow targeted treatment and prevent onward transmission. We have previously shown metagenomic sequencing of urine samples from men with urethral gonorrhea can recover near-complete N. gonorrhoeae genomes. However, disentangling the N. gonorrhoeae genome from metagenomic samples and robustly identifying antimicrobial resistance de...
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- Publication status:
- Published
- Peer review status:
- Peer reviewed
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(Version of record, 1.7MB)
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- Publisher copy:
- 10.1101/gr.262865.120
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Authors
Bibliographic Details
- Publisher:
- Cold Spring Harbor Laboratory Press Publisher's website
- Journal:
- Genome Research Journal website
- Volume:
- 30
- Issue:
- 9
- Pages:
- 1354-1363
- Place of publication:
- United States
- Publication date:
- 2020-09-01
- Acceptance date:
- 2020-07-27
- DOI:
- EISSN:
-
1549-5469
- ISSN:
-
1088-9051
- Pmid:
-
32873606
Item Description
- Language:
- English
- Keywords:
- Pubs id:
-
1130183
- Local pid:
- pubs:1130183
- Deposit date:
- 2020-10-20
Terms of use
- Copyright holder:
- Sanderson et al.
- Copyright date:
- 2020
- Rights statement:
- ©2020 Sanderson et al.; Published by Cold Spring Harbor Laboratory Press This article, published in Genome Research, is available under a Creative Commons License (Attribution 4.0 International), as described at http://creativecommons.org/licenses/by/4.0/.
- Licence:
- CC Attribution (CC BY)
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